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Add support for (topological) branches and merges in generate_repo.py

David Douard requested to merge generated-differential-D5885-source into generated-differential-D5885-target

and include an example input file (currently not used in actual tests).

Alsod make generate_storage_from_git include all branches by default instead of only master.

Needed for future origin-to-revision layer tests.

Migrated from D5885 (view on Phabricator)

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