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test: Make sure loader runs use tmp_path fixture

Antoine R. Dumont requested to merge generated-differential-D6632-source into generated-differential-D6632-target

Without this, tests are leaving leftovers in /tmp after running tests. This commit fixes that by using tmp_path as root directory which is cleaned up afterwards by pytest.

Related to #3719

Test Plan

tox

Migrated from D6632 (view on Phabricator)

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