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package.loader: Deduplicate target SWHIDs

Antoine R. Dumont requested to merge generated-differential-D6739-source into generated-differential-D6739-target

So package loaders can actually finish their ingestion even when multiple releases target the same directory.

Related to #3763 (closed)

Test Plan

tox (should still be happy)

Migrated from D6739 (view on Phabricator)

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