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Replace RevisionMetadataIndexer with DirectoryMetadataIndexer

This will make it easier to support indexing from releases in the future (T4297), as it will remove the strong dependency on revision ids in the database and interfaces.

The existence of the indexer/table is mostly to deduplicate work between origins with the same head revision, and we do not use it outside this context, so this should have no impact.

The DB migration works by dropping both tables and re-indexing from scratch; which is necessary as we need to replace revision ids with directory ids.


Migrated from D7937 (view on Phabricator)

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